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These are some of the links that I visit often (well, not really, thanks to the advent of smart bookmarks and browsers simply remembering where you visit often, there's no point in having a links page, so these are probably all out of date).

Java References
Java 1.3 api
Java 1.4.1 api
Java 1.4.2 api
Java 1.5.0 api
Java 1.6 api
Java crypto spec
javax.servlet api
com.oroinc.text.regex api
com.oroinc.text.perl api
com.oroinc.text api
Sun's JAVA FORUMS
Gamelan
JARS
Javasoft
Javacats
Blackdown Home, this is a JDK for Linux.
IBM JDK, this is IBM's jdk and other stuff.
 
Misc References
RFC Hypertext Archive @ SunSITE Denmark
WWWebster Dictionary
Thesaurus.com
OpenGL
The Willcam Group - HTML reference
RFC Index (complete)
Dinkumware C/C++ Reference
C Programming Reference
The Giant Internet IC Masturbator, great for looking pinouts on random chips.
SQL Reference
DNS Related site, containing many useful lookup tools
Usenet Physics FAQ
Dict.org
Unskilled and Unaware of it
 
Linux References
InfoSysSec, security documenation, systems documentation, general info
s e c u r i t y f o c u s
Rootshell
Replay Associates
Exploit world -- Linux section
rpmfind.net
LinuxHQ
Linux Online - How toDocuments
Beowulf Project at CESDIS
The CVS manual
Linux Kernel Analysis
NetSys: Systems, Networks, Administration
A good list of Linux Kernel Documentation
Rex Swain's Perl Reference
An alternate Genoo installation guide
The Knoppix bootable linux OS
 
Tools and Utilities
Comet Search, this is the greatest search tool ever.
Transparent GIF's - Made Easy!!, an easy to use transparent gif maker.
TransWeb Transparent-GIF Service, MIT's transparent gif maker. You give it the url of the image you want to make transparent, click on the color that you want transparent, and there you have it.
Online GIF to ASCII translator
Weather in Shadyside, Pittsburgh
Unit Conversions
Free Sun Software
SMTP Sender Policy Framework
 
X stuff
X Window Managers
X Home
XFree86 Home
X Servers for Windows
Detailed X Glossary
Good list of X and Motif sites
Jamie Zawinski Hacks, source of xscreensaver.
comp.sources.x archive @ sunsite, this is the place (one of them) where all the sources from comp.sources.x are archived. Most likely find X sources here
X11 Contribs @ sunsite
 
Math stuff
1995 Mathematical Subject Classification, This site has very good links to all kinds of mathematics. There are 50+ categories of Mathematics, which with its own list of links to references, journals, web sites and books.
Mathematrix, a nice little simple resource site.
List of small primes
List of prime gaps
Principia Cybernetica
Godel's proof
Zero Knowledge Proofs
Encyclopedia of Integer Sequences
Foundations of Cryptography
Mersenne Prime Search
Mathematical Programming Gallery
Constructivism
 
Movie Stuff
Jackie Chan movies, this is a pretty good page for movie reviews.
Jackie Chan and Bruce Lee Links
The Offical Unoffical Jackie Chan Home Page
Tai Seng Videos, good source of good old fashioned kung fu.
Internet Movie Database
Movie Review Query Engine
This Week at the Pittsburgh Cinemas
 
Music stuff
Lucas Pickford, really good site for solo transcriptions
Patterns and Solo Transcriptions, by Charlues McNeal
stuntzner.brent.org's, pages of solo transcriptions
JORG HEUSER'S JAZZ TRANSCRIPTIONS, and some Frank Zappa transcriptions, links, and books
Massimo Morrone, excellent site for John McLaughlin transcriptions
Bossa Nova Guitar Transcriptions
All About Jazz, with many interesting columns about artists or jazz in general
Song Trellis, Awesome site for chord progressions and practice
Miles Ahead: A Miles Davis website, this site has all the miles davis discography.
The only 2 radio stations I listen to: WQED WDUQ. Hooray for public radio!
Mingus site
All Music Guide
CDDB Music Database
Jazzworld.com
Amazon
MP3.com
music.com
Classical Guitar Tablature
 
Misc fun stuff
Peter H. Anderson - Embedded Processor Control
Alltech Electronics & Computer Chopper!, cheap cheap computer stuff.
Welcome to computershopper.com
Comet's Home Page, this is the tesuji home.
Comet's FRACTALS page, lots of fractal stuff, programs and movies.
Comet's JAVA stuff, lots of java stuff, free java programs.
trek guide
A page with Starship Dimensions and scale images and comparisons
List of minor Star Wars Jedi
The Sith, including a listing of Sith Lords
7 Forms of Light Saber Combat
 
Gaming stuff
Allakhazam's EQ pages
Maximum EQ, Maximum EQ's Everquest site
EQ Maps, Everquest Maps
EQ Atlas, Everquest Atlas site, another maps site
Everlore, a thorough Everquest page, updated regularly.
Game Znet's Everquest pages., not as complete as everlore, but sometimes easier to sift through.
EQ skins
New EQ interface collections
N64 ign
Playstation ign
Dreamcast ign
Game faqs, This is a great place for hints, walkthroughs, and reference.
Game Znet, This is mostly PC games.
Xblast, this is a nice Xblast page.
Gran Turismo: The Real Driving Simulator
GTA: The Gran Turismo Authority
 
Go stuff
Go Base, Jan van der Steen's comprehensive go site with a large collection of games, josekis, fusekis, and articles.
The Go Teaching Ladder game reviews
Joseki Dictionary with commentary at daytongo (interactive, applet driven)
Go Problems.com, a fairly extensive database of many different types of problems ranked by difficulty.
Life and Death problems
USGO page of problems
USGO game index
 
Car stuff
Manchester Honda Home Page
Gordon Callender's Unofficial Accord Homepage
Close outs
Performance auto parts
Modern Performance Racing Products, this place has a lot of good stuff and good brands.
Archer Racing, another good source for more horsepower.
Horta list of Honda performace parts., this guy has a really good list for all kinds of stuff for your Honda/Acura.
Tamir's DeLorean Site, not a big fan of the car, but this is an amazing website
 
Smart Cards
Sun's Javacard homepage
Javacard API javadocs
Gem Plus' homepage
Some very good Smartcard resources
Opencard's homepage
Opencard's 1.2 API javadocs
JavaCards, the OpenCard Framework and Single Sign On, a nice page concerning smartcard/JavaCard security and its limitations
Bo Lavare's Smartcard Security Page, a well organized, up to date page concerning security issues with smartcards.
This site,Macchiato, briefly goes over smart cards and programming for them, covering both the card side and the reader side.
Here's a link to The Java Commerce Toolkit which includes Java Wallet, a bunch of java applications for online commerce and includes software drivers for several smartcard readers.
PCMCIA
Dave Ruske's page: Making Sense of PCMCIA, a really good general overview of PCMCIA
PCMCIA.org
Linux PCMCIA info page
A good PC-card resource page
A fairly complete PCCard FAQ
David Hinds' document about Raylink and WebGear Wireless LAN Cards
PCCard kernel structures
PCMCIA socket tester